Publications

Arasimowicz-Jelonek, M., Floryszak-Wieczorek, J., Suarez, S., Doctorovich, F., Sobieszczuk-Nowicka, E. A., Bruce King, S., Milczarek, G., Rębiś, T., Gajewska, J., Jagodzik, P., & Żywicki, M. (2023). Discovery of endogenous nitroxyl as a new redox player in Arabidopsis thaliana. Nature Plants, 9, 36–44. https://doi.org/10.1038/s41477-022-01301-z

Bajczyk, M., Jarmołowski, A., Jóźwiak, M., Pacak, A., Pietrykowska, H., Sierocka, I., Świda-Barteczka, A. K., Szewc, Ł., & Szweykowska-Kulińska, Z. (2023). Recent Insights into Plant miRNA Biogenesis: Multiple Layers of miRNA Level Regulation. Plants, 12, 1–25. https://doi.org/10.3390/plants12020342

Bielewicz, D., Dolata, J., Bajczyk, M., Szewc, Ł., Gulanicz, T., Bhat, S., Karlik, A., Jóźwiak, M., Jarmołowski, A., & Szweykowska-Kulińska, Z. (2023). Hyponastic Leaves 1 interacts with RNA Pol II to ensure proper transcription of microRNA genes. Plant and Cell Physiology, 64, 571–582. https://doi.org/10.1093/pcp/pcad032

Bluyssen, H., & Chatzigeorgiou, A. (2023). Editorial: Updates on innate immune responses in hepatic health and disease. Frontiers in Immunology, 14, 1–3. https://doi.org/10.3389/fimmu.2023.1190405

Cai, C., Pele, A., Bucher, J., Finkers, R., & Bonnema, G. (2023). Fine mapping of meiotic crossovers in Brassica oleracea reveals patterns and variations depending on direction and combination of crosses. Plant Journal, 113, 1192–1210. https://doi.org/10.1111/tpj.16104

Chodkowski, M., Zieleziński, A., & Anbalagan, S. (2023). A ligand-receptor interactome atlas of the zebrafish. bioRxiv, null. https://doi.org/10.1101/2022.12.15.520415

Czerniawski, P., Piślewska-Bednarek, M., Piasecka, A., Kułak, K., & Bednarek, P. (2023). Loss of MYB34 Transcription Factor Supports the Backward Evolution of Indole Glucosinolate Biosynthesis in a Subclade of the Camelineae Tribe and Releases the Feedback Loop in This Pathway in Arabidopsis. Plant and Cell Physiology, 64, 80–93. https://doi.org/10.1093/pcp/pcac142

Gawade, K., Plewka, P., Häfner, S. J., Lund, A. H., Marchand, V., Motorin, Y., Szcześniak, M., & Raczyńska, K. D. (2023). FUS regulates a subset of snoRNA expression and modulates the level of rRNA modifications. Scientific Reports, 13, 1–18. https://doi.org/10.1038/s41598-023-30068-2

Hoefner, C., Bryde, T. H., Pihl, C., Tiedemann, S. N., Bresson, S. E., Hotiana, H. A., Khilji, M. S., Santos, T. D., Puglia, M., Pisano, P., Majewska, M., Durzyńska, J. Ł., Klindt, K., Klusek, J., Perone, M. J., Bucki, R., Hägglund, P. M., Gourdon, P. E., Gotfryd, K., et al. (2023). FK506-Binding Protein 2 Participates in Proinsulin Folding. Biomolecules, 13, 1–20. https://doi.org/10.3390/biom13010152

Janicki, M., Ściuk, A., Zieleziński, A., Ruszkowski, M., Ludwików, A., Karłowski, W. M., Jaskólski, M., & Loch, J. I. (2023). The effects of nature‐inspired amino acid substitutions on structural and biochemical properties of the E. coli L‐asparaginase EcAIII. Protein Science, 32, 1–20. https://doi.org/10.1002/pro.4647

Jarmuszkiewicz, W., Dominiak, K., Budzińska, A. J., Wojcicki, K., & Gałgański, Ł. (2023). Mitochondrial Coenzyme Q Redox Homeostasis and Reactive Oxygen Species Production. Frontiers in Bioscience-Landmark, 28, 1–14. https://doi.org/10.31083/j.fbl2803061

Joachimiak, P., Ciesiołka, A., Kozłowska, E., Świtoński, P. M., Figura, G., Ciołak, A., Adamek, G., Surdyka, M., Kalinowska-Pośka, Ż., Figiel, M., Caron, N. S., Hayden, M. R., & Fiszer, A. (2023). Allele-specific quantitation of ATXN3 and HTT transcripts in polyQ disease models. BMC Biology, 21, null. https://doi.org/10.1186/s12915-023-01515-3

Jóźwiak, M., Bielewicz, D., Szweykowska-Kulińska, Z., Jarmołowski, A., & Bajczyk, M. (2023). SERRATE: a key factor in coordinated RNA processing in plants. Trends in Plant Science, 28, 841–853. https://doi.org/10.1016/j.tplants.2023.03.009

Karłowski, W. M., Varshney, D., & Zieleziński, A. (2023). Taxonomically Restricted Genes in Bacillus may Form Clusters of Homologs and Can be Traced to a Large Reservoir of Noncoding Sequences. Genome Biology and Evolution, 15, 1–16. https://doi.org/10.1093/gbe/evad023

Kmita, H., Messina, A. A., & De Pinto, V. (2023). VDAC as a Cellular Hub: Docking Molecules and Interactions. International Journal of Molecular Sciences, 24, 1–3. https://doi.org/10.3390/ijms24076649

Mehdi, S. M. M., Szcześniak, M., & Ludwików, A. (2023). The Bro1-like domain-containing protein, AtBro1, modulates growth and abiotic stress responses in Arabidopsis. Frontiers in Plant Science, 14, 1–21. https://doi.org/10.3389/fpls.2023.1157435

Pakuła, K., Sequeiros Borja, C. E., Biała-Leonhard, W., Pawela, A., Banasiak, J., Bailly, A., Radom, M., Geisler, M., Brezovsky, J., & Jasiński, M. (2023). Restriction of access to the central cavity is a major contributor to substrate selectivity in plant ABCG transporters. Cellular and Molecular Life Sciences, 80, 1–17. https://doi.org/10.1007/s00018-023-04751-6

Pasieka, R., Zasoński, G. W., & Raczyńska, K. D. (2023). Role of Long Intergenic Noncoding RNAs in Cancers with an Overview of MicroRNA Binding. Molecular Diagnosis & Therapy, 27, 29–47.

Poggini, S., Banqueri, M., Albanese, N. C., Golia, M. T., Ibáñez, F. G., Limatola, C., Furhmann, M., Łałowski, M., Tremblay, M.-E., Maggi, L., Kaminska, B., & Branchi, I. (2023). Minocycline treatment improves cognitive and functional plasticity in a preclinical mouse model of major depressive disorder. Behavioural Brain Research, 441, null. https://doi.org/10.1016/j.bbr.2023.114295

Roszkowska, M., Gołdyn, B., Wojciechowska, D., Książkiewicz, Z., Fiałkowska, E., Pluskota, M., Kmita, H., & Kaczmarek, Ł. (2023). How long can tardigrades survive in the anhydrobiotic state? A search for tardigrade anhydrobiosis patterns. PLoS ONE, 18, 1–19. https://doi.org/10.1371/journal.pone.0270386

Rykowski, S., Gurda-Woźna, D., Fedoruk-Wyszomirska, A., Orlicka-Płocka, M., Kowalczyk, A. E., Stączek, P., Denel-Bobrowska, M., Biniek-Antosiak, K., Rypniewski, W., Wyszko, E., & Olejniczak, A. B. (2023). Carboranyl-1,8-naphthalimide intercalators induce lysosomal membrane permeabilization and ferroptosis in cancer cell lines. Journal of Enzyme Inhibition and Medicinal Chemistry, 38, 1–25. https://doi.org/10.1080/14756366.2023.2171028

Sekrecka, A., Kluzek, K., Sekrecki, M., Eskandarian Boroujeni, M., Hassani, S., Yamauchi, S., Sada, K., Wesoły, J. Z., & Bluyssen, H. (2023). Time-dependent recruitment of GAF, ISGF3 and IRF1 complexes shapes IFNα and IFNγ-activated transcriptional responses and explains mechanistic and functional overlap. Cellular and Molecular Life Sciences, 80, 1–25. https://doi.org/10.1007/s00018-023-04830-8

Sequeiros Borja, C. E., Surpeta, B., Marchlewski, I., & Brezovsky, J. (2023). Divide-and-conquer approach to study protein tunnels in long molecular dynamics simulations. MethodsX, 10, 1–7. https://doi.org/10.1016/j.mex.2022.101968

Swaminathan, A., Gliksberg, M., Anbalagan, S., Wigoda, N., & Levkowitz, G. (2023). Stress resilience is established during development and is regulated by complement factors. Cell Reports, 42, 1–17. https://doi.org/10.1016/j.celrep.2022.111973

Szlachcic, W., Letai, K. C., Scavuzzo, M. A., & Borowiak, M. (2023). Deep into the niche: Deciphering local endoderm‐microenvironment interactions in development, homeostasis, and disease of pancreas and intestine. BioEssays, 45, 1–17. https://doi.org/10.1002/bies.202200186

Szlachtowska, Z., & Rurek, M. S. (2023). Plant dehydrins and dehydrin-like proteins: characterization and participation in abiotic stress response. Frontiers in Plant Science, 14, 1–19. https://doi.org/10.3389/fpls.2023.1213188

Szuba, A., Ratajczak, E., Leski, T., Jasińska, A. K., Hanć, A., Piechalak, A., Woźniak, G., & Jagodziński, A. M. (2023). Physiological response of adult Salix aurita in wetland vegetation affected by flooding with As-rich fine pyrite particles. Science of the Total Environment, 865, null. https://doi.org/10.1016/j.scitotenv.2022.161197

Szymańska-Lejman, M., Dzięgielewski, W., Dłużewska, J., Kbiri, N., Bieluszewska, A., Poethig, R. S., & Ziółkowski, P. (2023). The effect of DNA polymorphisms and natural variation on crossover hotspot activity in Arabidopsis hybrids. Nature Communications, 14, 1–16. https://doi.org/10.1038/s41467-022-35722-3

Świda-Barteczka, A. K., Pacak, A., Kruszka, K., Nuc, P., Karłowski, W. M., Jarmołowski, A., & Szweykowska-Kulińska, Z. (2023). MicroRNA172b-5p/trehalose-6-phosphate synthase module stimulates trehalose synthesis and microRNA172b-3p/AP2-like module accelerates flowering in barley upon drought stress. Frontiers in Plant Science, 14, 1–20. https://doi.org/10.3389/fpls.2023.1124785

Wesoły, J. Z., Pstrąg, N., Derylo, K., Michalec-Wawiórka, B., Derebecka, N., Nowicka, H., Kajdasz, A., Kluzek, K., Srebniak, M., Tchórzewski, M., Kwias, Z., & Bluyssen, H. (2023). Structural, topological, and functional characterization of transmembrane proteins TMEM213, 207, 116, 72 and 30B provides a potential link to ccRCC etiology. American Journal of Cancer Research, 13, 1863–1883.

Woyda-Płoszczyca, A. (2023). Direct and indirect targets of carboxyatractyloside, including overlooked toxicity toward nucleoside diphosphate kinase (NDPK) and mitochondrial H+ leak. Pharmaceutical Biology, 61, 372–390. https://doi.org/10.1080/13880209.2023.2168704

Wysocka, E., Gonicka, A., & Anbalagan, S. (2023). CRISPR-Cas9 F0 knockout approach using predesigned in vitro transcribed guide RNAs partially recapitulates Rx3 function in eye morphogenesis. Journal of Genetics, 102, 1–6. https://doi.org/10.1007/s12041-022-01408-4

Zimna, M. M., Dolata, J., Szweykowska-Kulińska, Z., & Jarmołowski, A. (2023). The expanding role of RNA modifications in plant RNA polymerase II transcripts: highlights and perspectives. Journal of Experimental Botany, null. https://doi.org/10.1093/jxb/erad136

Ziółkowski, P. (2023). Why do plants need the ZMM crossover pathway? A snapshot of meiotic recombination from the perspective of interhomolog polymorphism. Plant Reproduction, 36, 43–54. https://doi.org/10.1007/s00497-022-00446-3

 

2022

 

Albrycht, K., Rynkiewicz, A. A., Harasymczuk, M., Barylski, J., & Zieleziński, A. (2022). Daily Reports on Phage-Host Interactions. Frontiers in Microbiology, 13, 1–6. https://doi.org/10.3389/fmicb.2022.946070

Baud, A. H., Derbis, M., Tutak, K. M., & Sobczak, K. (2022). Partners in crime: Proteins implicated in RNA repeat expansion diseases. Wiley Interdisciplinary Reviews-RNA, 13, 1–39. https://doi.org/10.1002/wrna.1709

Bieluszewski, T., Sura, W., Dzięgielewski, W., Bieluszewska, A., Lachance, C., Kabza, M., Szymańska-Lejman, M., Abram, M., Wlodzimierz, P., De Winne, N., De Jaeger, G., Sadowski, J., Côté, J., & Ziółkowski, P. (2022). NuA4 and H2A.Z control environmental responses and autotrophic growth in Arabidopsis. Nature Communications, 13, 1–20. https://doi.org/10.1038/s41467-021-27882-5

Bittner, A., Cieśla, A., Gruden, K., Lukan, T., Mahmud, S., Teige, M., Vothknecht, U. C., & Wurzinger, B. (2022). Organelles and phytohormones: a network of interactions in plant stress responses. Journal of Experimental Botany, 73, 7165–7181. https://doi.org/10.1093/jxb/erac384

Brezovsky, J., Thirunavukarasu, A., Surpeta, B., Sequeiros Borja, C. E., Mandal, N., Sarkar, D., Dongmo Foumthuim, C. J., & Agrawal, N. (2022). TransportTools: a library for high-throughput analyses of internal voids in biomolecules and ligand transport through them. Bioinformatics, 38, 1752–1753. https://doi.org/10.1093/bioinformatics/btab872

Chmielowiec, J., Szlachcic, W., Yang, D., Scavuzzo, M. A., Wamble, K., Sarrion-Perdigones, A., Sabek, O. M., Venken, K. J. T., & Borowiak, M. (2022). Human pancreatic microenvironment promotes β-cell differentiation via non-canonical WNT5A/JNK and BMP signaling. Nature Communications, 13, 1–18. https://doi.org/10.1038/s41467-022-29646-1

Cichocka, M., Karlik, A., Plewka, P., Gawade, K., Stępień, A. K., Świergiel, P. A., Gadgil, A., & Raczyńska, K. D. (2022). The Novel Role of hnRNP UL1 in Human Cell Nucleoli. International Journal of Biological Sciences, 18, 4809–4823. https://doi.org/10.7150/ijbs.75084

Dełeńko, K., Nuc, P., Kubiak, D., Bielewicz, D., Dolata, J., Niedojadło, K., Górka, S., Jarmołowski, A., Szweykowska-Kulińska, Z., & Niedojadło, J. (2022). MicroRNA biogenesis and activity in plant cell dedifferentiation stimulated by cell wall removal. BMC Plant Biology, 22, 1–14. https://doi.org/10.1186/s12870-021-03323-9

Dominiak, K., Gałgański, Ł., Budzińska, A. J., Woyda-Płoszczyca, A., Zoladz, J. A., & Jarmuszkiewicz, W. (2022). Effects of Endurance Training on the Coenzyme Q Redox State in Rat Heart, Liver, and Brain at the Tissue and Mitochondrial Levels: Implications for Reactive Oxygen Species Formation and Respiratory Chain Remodeling. International Journal of Molecular Sciences, 23, 1–16. https://doi.org/10.3390/ijms23020896

Eskandarian Boroujeni, M., Sekrecka, A., Antończyk, A., Hassani, S., Sekrecki, M., Nowicka, H., Łopacinska, N., Olya, M. E., Kluzek, K., Wesoły, J. Z., & Bluyssen, H. (2022). Dysregulated Interferon Response and Immune Hyperactivation in Severe COVID-19: Targeting STATs as a Novel Therapeutic Strategy. Frontiers in Immunology, 13, 1–15. https://doi.org/10.3389/fimmu.2022.888897

Fernández-Justel, J. M., Santa-María, C., Martín-Vírgala, S., Ramesh, S., Ferrera-Lagoa, A., Salinas-Pena, M., Isoler-Alcaraz, J., Masłoń, M., Jordan, A., Cáceres, J. F., & Gómez, M. (2022). Histone H1 regulates non-coding RNA turnover on chromatin in a m6A-dependent manner. Cell Reports, 40, 1–21. https://doi.org/10.1016/j.celrep.2022.111329

Filipiak-Duliban, A., Brodaczewska, K., Kajdasz, A., & Kieda, C. (2022). Spheroid Culture Differentially Affects Cancer Cell Sensitivity to Drugs in Melanoma and RCC Models. International Journal of Molecular Sciences, 23, 1–13. https://doi.org/10.3390/ijms23031166

Gallego, A., Fernández-Justel, J. M., Martín-Vírgala, S., Masłoń, M., & Gómez, M. (2022). Slow RNAPII Transcription Elongation Rate, Low Levels of RNAPII Pausing, and Elevated Histone H1 Content at Promoters Associate with Higher m6A Deposition on Nascent mRNAs. Genes, 13, 1–12. https://doi.org/10.3390/genes13091652

Gdula, M., Kopczyńska, M., Saha, U., & Kamieniarz-Gdula, K. M. (2022). CLP1-dependent premature transcription termination opposes neurodegeneration. Neuron, 110, 1277–1280. https://doi.org/10.1016/j.neuron.2022.03.012

Gonzalo, L., Tossolini, I., Gulanicz, T., Cambiagno, D. A., Kasprowicz-Maluśki, A., Smolinski, D. J., Mammarella, M. F., Ariel, F. D., Marquardt, S., Szweykowska-Kulińska, Z., Jarmołowski, A., & Manavella, P. A. (2022). R-loops at microRNA encoding loci promote co-transcriptional processing of pri-miRNAs in plants. Nature Plants, 8, 402–418. https://doi.org/10.1038/s41477-022-01125-x

Jedrzejak, A. P., Urbaniak, E. K., Waśko, J. A., Ziojła, N., & Borowiak, M. (2022). Diabetes and SARS-CoV-2–Is There a Mutual Connection? Frontiers in Cell and Developmental Biology, 10, null. https://doi.org/10.3389/fcell.2022.913305

Joachimiak, P., Ciesiołka, A., Figura, G., Kozłowska, E., Świtonśki, P. M., Surdyka, M., Kalinowska-Pośka, Ż., Figiel, M., Caron, N. S., Hayden, M. R., & Fiszer, A. (2022). D02 Precise and allele-specific quantitation of endogenous <i>HTT</i> transcript alleles using droplet-digital PCR. D: Wet biomarkers, null. https://doi.org/10.1136/jnnp-2022-ehdn.58

Kajdasz, A., Niewiadomska, D., Sekrecki, M., & Sobczak, K. (2022). Distribution of alternative untranslated regions within the mRNA of the CELF1 splicing factor affects its expression. Scientific Reports, 12, 1–15. https://doi.org/10.1038/s41598-021-03901-9

Kirchenwitz, M., Stahnke, S., Prettin, S., Borowiak, M., Menke, L., Sieben, C., Birchmeier, C., Rottner, K., Stradal, T. E. B., & Steffen, A. (2022). SMER28 Attenuates PI3K/mTOR Signaling by Direct Inhibition of PI3K p110 Delta. Cells, 11, 1–22. https://doi.org/10.3390/cells11101648

Kong, Y., Jing, Y., Allard, D., Scavuzzo, M. A., Sprouse, M. L., Borowiak, M., Bettini, M. L., & Bettini, M. (2022). A dormant T‐cell population with autoimmune potential exhibits low self‐reactivity and infiltrates islets in type 1 diabetes. European Journal of Immunology, 52, 1158–1170. https://doi.org/10.1002/eji.202149690

Kuczyński, J., Gracz-Bernaciak, J., Twardowski, T., Karłowski, W. M., & Tyczewska, A. (2022). Cold stress‐induced miRNA and degradome changes in four soybean varieties differing in chilling resistance. Journal of Agronomy and Crop Science, 208, 777–794. https://doi.org/10.1111/jac.12557

Lee, U.-S., Bieluszewski, T., Xiao, J., Yamaguchi, A., & Wagner, D. (2022). H2A.Z contributes to trithorax activity at the AGAMOUS locus. Molecular Plant, 15, 207–210. https://doi.org/10.1016/j.molp.2022.01.005

Nagwani, A., Kaczmarek, Ł., & Kmita, H. (2022). Applicable Life-History and Molecular Traits for Studying the Effects of Anhydrobiosis on Aging in Tardigrades. Diversity, 14, 1–19. https://doi.org/10.3390/d14080664

Olejniczak, M., Jiang, X., Basczok, M., & Storz, G. (2022). KH domain proteins: Another family of bacterial RNA matchmakers? Molecular Microbiology, 117, 10–19. https://doi.org/10.1111/mmi.14842

Pietrykowska, H., Sierocka, I., Zieleziński, A., Alisha, A., Carrasco-Sanchez, J. C., Jarmołowski, A., Karłowski, W. M., & Szweykowska-Kulińska, Z. (2022). Biogenesis, conservation, and function of miRNA in liverworts. Journal of Experimental Botany, 73, 4528–4545. https://doi.org/10.1093/jxb/erac098

Plawgo, K., & Raczyńska, K. D. (2022). Context-Dependent Regulation of Gene Expression by Non-Canonical Small RNAs. Non-Coding RNA, 8, 29. https://doi.org/10.3390/ncrna8030029

Plens-Gałąska, M., Woźniak, T., Wesoły, J. Z., & Bluyssen, H. (2022). SINBAD, structural, experimental and clinical characterization of STAT inhibitors and their potential applications. Scientific Data, 9, 1–6. https://doi.org/10.1038/s41597-022-01243-3

Plewka, P., & Raczyńska, K. D. (2022). Long Intergenic Noncoding RNAs Affect Biological Pathways Underlying Autoimmune and Neurodegenerative Disorders. Molecular Neurobiology, 59, 5785–5808. https://doi.org/10.1007/s12035-022-02941-0

Poprawa, I., Bartylak, T., Kulpla, A., Erdmann, W., Roszkowska, M., Chajec, Ł., Kaczmarek, Ł., Karachitos, A., & Kmita, H. (2022). Verification of Hypsibius exemplaris Gąsiorek et al., 2018 (Eutardigrada; Hypsibiidae) application in anhydrobiosis research. PLoS ONE, 17, 1–12. https://doi.org/10.1371/journal.pone.0261485

Poręba, E., Leśniewicz, K., & Durzyńska, J. Ł. (2022). Histone–lysine N-methyltransferase 2 (KMT2) complexes – a new perspective. Mutation Research-Reviews in Mutation Research, 790, 1–17. https://doi.org/10.1016/j.mrrev.2022.108443

Przymuszała, M., Gwit, M., Waśko, J. A., Morańska, K., & Kajdasz, A. (2022). Spinal muscular atrophy: Where are we now? Current challenges and high hopes. Postępy Higieny I Medycyny Doświadczalnej, 76, 407–419. https://doi.org/10.2478/ahem-2022-0030

Rogalska, Z., & Sobczak, K. (2022). Sustainable recovery of MBNL activity in autoregulatory feedback loop in myotonic dystrophy. Molecular Therapy-Nucleic Acids, 30, 438–448. https://doi.org/10.1016/j.omtn.2022.10.023

Rurek, M. S. (2022). Wydarzenie w Oddziale Poznańskim: V Ogólnopolska Konferencja „Biotechnologia niejedno ma imię”. Postępy Biochemii, 68, 450–453.

Rybak, A. S., & Woyda-Płoszczyca, A. (2022). Tropical red alga Compsopogon caeruleus: an indicator of thermally polluted waters of Europe in the context of temperature and oxygen requirements. Algae, 37, 301–316. https://doi.org/10.4490/algae.2022.37.11.18

Shcheglova, E., Błaszczyk, K., & Borowiak, M. (2022). Mitogen Synergy: An Emerging Route to Boosting Human Beta Cell Proliferation. Frontiers in Cell and Developmental Biology, 9, 1–25. https://doi.org/10.3389/fcell.2021.734597

Smoczyńska, A., Pacak, A., Grabowska, A., Bielewicz, D., Zadworny, M., Singh, K., Dolata, J., Bajczyk, M., Nuc, P., Kesy, J., Woźniak, M., Ratajczak, I., Harwood, W., Karłowski, W. M., Jarmołowski, A., & Szweykowska-Kulińska, Z. (2022). Excess nitrogen responsive HvMADS27 transcription factor controls barley root architecture by regulating abscisic acid level. Frontiers in Plant Science, 13, 1–19. https://doi.org/10.3389/fpls.2022.950796

Stępień, A. K., Dolata, J., Gulanicz, T., Bielewicz, D., Bajczyk, M., Smolinski, D. J., Szweykowska-Kulińska, Z., & Jarmołowski, A. (2022). Chromatin-associated microprocessor assembly is regulated by the U1 snRNP auxiliary protein PRP40. Plant Cell, 34, 4920–4935. https://doi.org/10.1093/plcell/koac278

Su, J., Lu, Y.-J., Staal, J., & Ludwików, A. (2022). Editorial: Protein phosphorylation and dephosphorylation in plant-microbe interactions. Frontiers in Plant Science, 13, 1–3. https://doi.org/10.3389/fpls.2022.1020772

Surpeta, B., Grulich, M., Palyzová, A., Marešová, H., & Brezovsky, J. (2022). Common Dynamic Determinants Govern Quorum Quenching Activity in N-Terminal Serine Hydrolases. ACS Catalysis, 12, 6359–6374. https://doi.org/10.1021/acscatal.2c00569

Szlachcic, W., Dabrowska, A., Milewska, A., Ziojła, N., Blaszczyk, K., Barreto-Duran, E., Sanak, M., Surmiak, M., Owczarek, K., Grzanka, D., Durzyńska, J. Ł., Pyrc, K., & Borowiak, M. (2022). SARS-CoV-2 infects an in vitro model of the human developing pancreas through endocytosis. iScience, 25, 1–22. https://doi.org/10.1016/j.isci.2022.104594

Szpotkowska, J., Szpotkowski, K., & Ciesiołka, J. (2022). Structural Characteristics of the 5′-Terminal Region of Mouse p53 mRNA and Identification of Proteins That Bind to This mRNA Region. International Journal of Molecular Sciences, 23, 1–23. https://doi.org/10.3390/ijms23179709

Wyrzykowska, A., Bielewicz, D., Plewka, P., Sołtys‐Kalina, D., Wasilewicz‐Flis, I., Marczewski, W., Jarmołowski, A., & Szweykowska-Kulińska, Z. (2022). The MYB33, MYB65, and MYB101 transcription factors affect Arabidopsis and potato responses to drought by regulating the ABA signaling pathway. Physiologia Plantarum, 174, 1–17. https://doi.org/10.1111/ppl.13775

Zhang, R., Kuo, R., Coulter, M., Calixto, C. P. G., Entizne, J. C., Guo, W., Marquez, Y., Milne, L., Riegler, S., Matsui, A., Tanaka, M., Harvey, S., Gao, Y., Wießner-Kroh, T., Paniagua, A., Crespi, M., Denby, K., Hur, A. b., Huq, E., et al. (2022). A high-resolution single-molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis. Genome Biology, 23, 1–37. https://doi.org/10.1186/s13059-022-02711-0

Zieleziński, A., Loch, J. I., Karłowski, W. M., & Jaskólski, M. (2022). Massive annotation of bacterial l-asparaginases reveals their puzzling distribution and frequent gene transfer events. Scientific Reports, 12, 1–12. https://doi.org/10.1038/s41598-022-19689-1

Zieleziński, A., Deorowicz, S., & Gudyś, A. (2022). PHIST: fast and accurate prediction of prokaryotic hosts from metagenomic viral sequences. Bioinformatics, 38, 1447–1449. https://doi.org/10.1093/bioinformatics/btab837

Zoladz, J. A., Majerczak, J., Gałgański, Ł., Grandys, M., Zapart-Bukowska, J., Kuczek, P., Kołodziejski, L., Walkowicz, L., Szymoniak-Chochół, D., Kilarski, W., & Jarmuszkiewicz, W. (2022). Endurance Training Increases the Running Performance of Untrained Men without Changing the Mitochondrial Volume Density in the Gastrocnemius Muscle. International Journal of Molecular Sciences, 23, 1–16. https://doi.org/10.3390/ijms231810843

Rurek, M. S., Taube, M., Bielewicz, D., Nowak, W., & Krzesiński, W. (2022). Roślinne białka bogate w glicynę – niezwykli gracze w odpowiedzi na stres. In Ł. Idczak, K. Wojtyniak, M. Ciechanowska, K. Pusiak, & M. Pietrowska-Borek (eds.), V Ogólnopolska Konferencja “Biotechnologia niejedno ma imię”. Książka abstraktów (p. 33).

Szuba, A., Ratajczak, E., Kasprowicz-Maluśki, A., & Pers-Kamczyc, E. (2022). Plant Responses to Harsh Conditions of Post-industrial Habitats. In A. Dyczko, A. Jagodziński, & G. Woźniak (Eds.), Green Scenarios: Mining Industry Responses to Environmental Challenges of the Anthropocene Epoch. International Mining Forum 2021 (pp. 1–26).

Bieluszewski, T., Szymańska-Lejman, M., Dzięgielewski, W., Zhu, L., & Ziółkowski, P. (2022). Efficient Generation of CRISPR/Cas9-Based Mutants Supported by Fluorescent Seed Selection in Different Arabidopsis Accessions. In C. Lambing (Ed.), Plant Gametogenesis. Methods and Protocols (Vol. 2484, pp. 161–182). https://doi.org/10.1007/978-1-0716-2253-7_13

Kbiri, N., Dłużewska, J., Henderson, I., & Ziółkowski, P. (2022). Quantifying Meiotic Crossover Recombination in Arabidopsis Lines Expressing Fluorescent Reporters in Seeds Using SeedScoring Pipeline for CellProfiler. In C. Lambing (Ed.), Plant Gametogenesis. Methods and Protocols (Vol. 2484, pp. 121–134). https://doi.org/10.1007/978-1-0716-2253-7_10

Rurek, M. S., Taube, M., Bielewicz, D., Nowak, W., & Krzesiński, W. (2022). Participation of glycine-rich proteins in cauliflower response to heat stress and recovery [Polski Kongres Genetyki, 27-30.06.2022, Kraków, książka abstraktów] [Paper presented].

Rurek, M. S., Krzesiński, W., & Spiżewski, T. (2022). Drought tolerance in sixteen cauliflower genotypes inferred from stress markers [Polski Kongres Genetyki, Kraków, 27-30.06.2022 – książka abstraktów] [Poster].